apero_fit_tellu_nirps_he¶
Contents¶
1. Description¶
SHORTNAME: FTELLU
No description set
2. Schematic¶
No schematic set
3. Usage¶
apero_fit_tellu_nirps_he.py {obs_dir}[STRING] [FILE:EXT_E2DS,EXT_E2DS_FF] {options}
{obs_dir}[STRING] // [STRING] The directory to find the data files in. Most of the time this is organised by nightly observation directory
[FILE:EXT_E2DS,EXT_E2DS_FF] // [STRING/STRINGS] A list of fits files to use separated by spaces. Currently allowed types: E2DS, E2DSFF
4. Optional Arguments¶
--use_template[True/False] // Whether to use the template provided from the telluric database
--template[FILE:TELLU_TEMP] // Filename of the custom template to use (instead of from telluric database)
--finiteres[True/False] // Whether to do the finite resolution correction (Always false if no template)
--onlypreclean // Only run the precleaning steps (not recommended - for debugging ONLY)
--database[True/False] // [BOOLEAN] Whether to add outputs to calibration database
--blazefile[FILE:FF_BLAZE] // [STRING] Define a custom file to use for blaze correction. If unset uses closest file from calibDB. Checks for an absolute path and then checks 'directory' (CALIBDB=BADPIX)
--plot[0>INT>4] // [INTEGER] Plot level. 0 = off, 1 = interactively, 2 = save to file
--wavefile[FILE:WAVESOL_REF,WAVE_NIGHT,WAVESOL_DEFAULT] // [STRING] Define a custom file to use for the wave solution. If unset uses closest file from header or calibDB (depending on setup). Checks for an absolute path and then checks 'directory'
--no_in_qc // Disable checking the quality control of input files
5. Special Arguments¶
--xhelp[STRING] // Extended help menu (with all advanced arguments)
--debug[STRING] // Activates debug mode (Advanced mode [INTEGER] value must be an integer greater than 0, setting the debug level)
--listing[STRING] // Lists the night name directories in the input directory if used without a 'directory' argument or lists the files in the given 'directory' (if defined). Only lists up to 15 files/directories
--listingall[STRING] // Lists ALL the night name directories in the input directory if used without a 'directory' argument or lists the files in the given 'directory' (if defined)
--version[STRING] // Displays the current version of this recipe.
--info[STRING] // Displays the short version of the help menu
--program[STRING] // [STRING] The name of the program to display and use (mostly for logging purpose) log becomes date | {THIS STRING} | Message
--recipe_kind[STRING] // [STRING] The recipe kind for this recipe run (normally only used in apero_processing.py)
--parallel[STRING] // [BOOL] If True this is a run in parellel - disable some features (normally only used in apero_processing.py)
--shortname[STRING] // [STRING] Set a shortname for a recipe to distinguish it from other runs - this is mainly for use with apero processing but will appear in the log database
--idebug[STRING] // [BOOLEAN] If True always returns to ipython (or python) at end (via ipdb or pdb)
--ref[STRING] // If set then recipe is a reference recipe (e.g. reference recipes write to calibration database as reference calibrations)
--crunfile[STRING] // Set a run file to override default arguments
--quiet[STRING] // Run recipe without start up text
--nosave // Do not save any outputs (debug/information run). Note some recipes require other recipesto be run. Only use --nosave after previous recipe runs have been run successfully at least once.
--force_indir[STRING] // [STRING] Force the default input directory (Normally set by recipe)
--force_outdir[STRING] // [STRING] Force the default output directory (Normally set by recipe)
6. Output directory¶
DRS_DATA_REDUC // Default: "red" directory
7. Output files¶
name |
description |
HDR[DRSOUTID] |
file type |
suffix |
basename |
fibers |
dbname |
dbkey |
input file |
|---|---|---|---|---|---|---|---|---|---|
ABSO_NPY |
Telluric absorption temporary file 1 |
– |
.npy |
– |
tellu_save.npy |
– |
– |
– |
– |
ABSO1_NPY |
Telluric absorption temporary file 2 |
– |
.npy |
– |
tellu_save1.npy |
– |
– |
– |
– |
TELLU_OBJ |
Telluric corrected extracted 2D spectrum |
TELLU_OBJ |
.fits |
_e2dsff_tcorr |
– |
A |
telluric |
TELLU_OBJ |
EXT_E2DS_FF |
SC1D_W_FILE |
Telluric corrected extracted 1D spectrum (constant wavelength binning) |
SC1D_W_FILE |
.fits |
_s1d_w_tcorr |
– |
A |
– |
– |
EXT_E2DS_FF |
SC1D_V_FILE |
Telluric corrected extracted 1D spectrum (constant velocity binning) |
SC1D_V_FILE |
.fits |
_s1d_v_tcorr |
– |
A |
– |
– |
EXT_E2DS_FF |
TELLU_RECON |
Telluric reconstructed 2D absorption file |
TELLU_RECON |
.fits |
_e2dsff_recon |
– |
A |
telluric |
TELLU_RECON |
EXT_E2DS_FF |
RC1D_W_FILE |
Telluric reconstructed 1D absorption file (constant wavelength binning) |
RC1D_W_FILE |
.fits |
_s1d_w_recon |
– |
A |
– |
– |
EXT_E2DS_FF |
RC1D_V_FILE |
Telluric reconstructed 1D absorption file (constant velocity binning) |
RC1D_V_FILE |
.fits |
_s1d_v_recon |
– |
A |
– |
– |
EXT_E2DS_FF |
TELLU_SCLEAN |
Sky-cleaning file |
TELLU_SCLEAN |
.fits |
_tellu_sclean.fits |
– |
– |
– |
– |
EXT_E2DS_FF |
TELLU_PCLEAN |
Telluric pre-cleaning file |
TELLU_PCLEAN |
.fits |
_tellu_pclean |
– |
A |
telluric |
TELLU_PCLEAN |
EXT_E2DS_FF |
8. Debug plots¶
TELLU_SKY_CORR_PLOT
EXTRACT_S1D
EXTRACT_S1D_WEIGHT
FTELLU_PCA_COMP1
FTELLU_PCA_COMP2
FTELLU_RECON_SPLINE1
FTELLU_RECON_SPLINE2
FTELLU_WAVE_SHIFT1
FTELLU_WAVE_SHIFT2
FTELLU_RECON_ABSO1
FTELLU_RECON_ABSO2
TELLUP_WAVE_TRANS
TELLUP_ABSO_SPEC
TELLUP_CLEAN_OH
FTELLU_RES_MODEL
TELLU_FINITE_RES_CORR
9. Summary plots¶
SUM_EXTRACT_S1D
SUM_FTELLU_RECON_ABSO
SUM_TELLUP_WAVE_TRANS
SUM_TELLUP_ABSO_SPEC
SUM_FTELLU_RES_MODEL