apero_wave_ref_nirps_ha

Contents

1. Description

SHORTNAME: WAVEREF

No description set

2. Schematic

No schematic set

3. Usage

apero_wave_ref_nirps_ha.py {obs_dir}[STRING] --hcfiles[FILE:HCONE_HCONE] --fpfiles[FILE:FP_FP] {options}

{obs_dir}[STRING] // [STRING] The directory to find the data files in. Most of the time this is organised by nightly observation directory
--hcfiles[FILE:HCONE_HCONE] // Current allowed types: HC1_HC1
--fpfiles[FILE:FP_FP] // Current allowed types: FP_FP

4. Optional Arguments

--database[True/False] // [BOOLEAN] Whether to add outputs to calibration database
--badpixfile[FILE:BADPIX] // [STRING] Define a custom file to use for bad pixel correction. Checks for an absolute path and then checks 'directory'
--badcorr[True/False] // [BOOLEAN] Whether to correct for the bad pixel file
--backsub[True/False] // [BOOLEAN] Whether to do background subtraction
--blazefile[FILE:FF_BLAZE] // [STRING] Define a custom file to use for blaze correction. If unset uses closest file from calibDB. Checks for an absolute path and then checks 'directory' (CALIBDB=BADPIX)
--combine[True/False] // [BOOLEAN] Whether to combine fits files in file list or to process them separately
--darkfile[FILE:DARKREF] // [STRING] The Dark file to use (CALIBDB=DARKM)
--darkcorr[True/False] // [BOOLEAN] Whether to correct for the dark file
--flipimage[None,x,y,both] // [BOOLEAN] Whether to flip fits image
--fluxunits[ADU/s,e-] // [STRING] Output units for flux
--locofile[FILE:LOC_LOCO] // [STRING] Sets the LOCO file used to get the coefficients (CALIBDB=LOC_{fiber})
--orderpfile[FILE:LOC_ORDERP] // [STRING] Sets the Order Profile file used to get the coefficients (CALIBDB=ORDER_PROFILE_{fiber}
--plot[0>INT>4] // [INTEGER] Plot level. 0 = off, 1 = interactively, 2 = save to file
--resize[True/False] // [BOOLEAN] Whether to resize image
--shapex[FILE:SHAPE_X] // [STRING] Sets the SHAPE DXMAP file used to get the dx correction map (CALIBDB=SHAPEX)
--shapey[FILE:SHAPE_Y] // [STRING] Sets the SHAPE DYMAP file used to get the dy correction map (CALIBDB=SHAPEY)
--shapel[FILE:SHAPEL] // [STRING] Sets the SHAPE local file used to get the local transforms (CALIBDB = SHAPEL)
--wavefile[FILE:WAVESOL_REF,WAVE_NIGHT,WAVESOL_DEFAULT] // [STRING] Define a custom file to use for the wave solution. If unset uses closest file from header or calibDB (depending on setup). Checks for an absolute path and then checks 'directory'
--forceext[True/False] // WAVE_EXTRACT_HELP
--cavityfile[FILE:WAVEREF_CAV] // WAVEREF_CAVFILE_HELP
--no_in_qc // Disable checking the quality control of input files

5. Special Arguments

--xhelp[STRING] // Extended help menu (with all advanced arguments)
--debug[STRING] // Activates debug mode (Advanced mode [INTEGER] value must be an integer greater than 0, setting the debug level)
--listing[STRING] // Lists the night name directories in the input directory if used without a 'directory' argument or lists the files in the given 'directory' (if defined). Only lists up to 15 files/directories
--listingall[STRING] // Lists ALL the night name directories in the input directory if used without a 'directory' argument or lists the files in the given 'directory' (if defined)
--version[STRING] // Displays the current version of this recipe.
--info[STRING] // Displays the short version of the help menu
--program[STRING] // [STRING] The name of the program to display and use (mostly for logging purpose) log becomes date | {THIS STRING} | Message
--recipe_kind[STRING] // [STRING] The recipe kind for this recipe run (normally only used in apero_processing.py)
--parallel[STRING] // [BOOL] If True this is a run in parellel - disable some features (normally only used in apero_processing.py)
--shortname[STRING] // [STRING] Set a shortname for a recipe to distinguish it from other runs - this is mainly for use with apero processing but will appear in the log database
--idebug[STRING] // [BOOLEAN] If True always returns to ipython (or python) at end (via ipdb or pdb)
--ref[STRING] // If set then recipe is a reference recipe (e.g. reference recipes write to calibration database as reference calibrations)
--crunfile[STRING] // Set a run file to override default arguments
--quiet[STRING] // Run recipe without start up text
--nosave // Do not save any outputs (debug/information run). Note some recipes require other recipesto be run. Only use --nosave after previous recipe runs have been run successfully at least once.
--force_indir[STRING] // [STRING] Force the default input directory (Normally set by recipe)
--force_outdir[STRING] // [STRING] Force the default output directory (Normally set by recipe)

6. Output directory

DRS_DATA_REDUC // Default: "red" directory

7. Output files

Outputs

name

description

HDR[DRSOUTID]

file type

suffix

fibers

dbname

dbkey

input file

EXT_E2DS_FF

Extracted + flat-fielded 2D spectrum

EXT_E2DS_FF

.fits

_e2dsff

A, B

–

–

DRS_PP

WAVESOL_REF

Reference wavelength solution calibration file

WAVESOL_REF

.fits

_wavesol_ref

A, B

calibration

WAVESOL_REF

EXT_E2DS, EXT_E2DS_FF

WAVEREF_CAV

Reference wavelength cavity width polynomial calibration file

WAVEREF_CAV

.fits

_waveref_cav_

A

calibration

WAVECAV

EXT_E2DS, EXT_E2DS_FF

WAVE_HCLIST_REF

Reference list of Hollow cathode lines calibration file

WAVE_HCLIST_REF

.fits

_waveref_hclines

A, B

calibration

WAVEHCL

EXT_E2DS, EXT_E2DS_FF

WAVE_FPLIST_REF

–

WAVE_FPLIST_REF

.fits

_waveref_fplines

A, B

calibration

WAVEFPL

EXT_E2DS, EXT_E2DS_FF

WAVERES

Reference wavelength resolution map file

WAVE_RES

.fits

_waveref_resmap

A, B

–

–

EXT_E2DS, EXT_E2DS_FF

WAVEM_RES_E2DS

Reference wavelength resolution e2ds file

WAVEM_RES_E2DS

.fits

_waveref_res_e2ds

A, B

calibration

WAVR_E2DS

EXT_E2DS, EXT_E2DS_FF

CCF_RV

Cross-correlation RV results file

CCF_RV

.fits

_ccf

A, B

–

–

EXT_E2DS_FF, TELLU_OBJ

8. Debug plots

WAVE_WL_CAV
WAVE_FIBER_COMPARISON
WAVE_FIBER_COMP
WAVE_HC_DIFF_HIST
WAVEREF_EXPECTED
EXTRACT_S1D
EXTRACT_S1D_WEIGHT
WAVE_RESMAP
CCF_RV_FIT
CCF_RV_FIT_LOOP

9. Summary plots

SUM_WAVE_FIBER_COMP
SUM_CCF_RV_FIT